AHF64757.1 protein (Synechococcus sp. WH 8109)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AHF64757.1

ATPases involved in chromosome partitioning-like protein. (231 aa)

Predicted Functional Partners:

AHF64546.1

0.605

AHF64754.1

0.590

AHF62591.1

0.521

AHF62490.1

0.503

hpnB

0.503

AHF64285.1

0.484

AHF64732.1

0.476

AHF64756.1

0.474

abrB

0.457

ribA/ribB

0.433

Your Current Organism:

Synechococcus sp. WH 8109

NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHF62490.1	AHF64757.1	Syncc8109_0065	Syncc8109_2448	Putative glycosyltransferase.	ATPases involved in chromosome partitioning-like protein.	0.503
AHF62591.1	AHF64285.1	Syncc8109_0173	Syncc8109_1941	Hypothetical protein.	Hypothetical protein.	0.759
AHF62591.1	AHF64732.1	Syncc8109_0173	Syncc8109_2415	Hypothetical protein.	Serum resistance locus BrkB-like protein.	0.413
AHF62591.1	AHF64754.1	Syncc8109_0173	Syncc8109_2445	Hypothetical protein.	Hypothetical protein.	0.713
AHF62591.1	AHF64757.1	Syncc8109_0173	Syncc8109_2448	Hypothetical protein.	ATPases involved in chromosome partitioning-like protein.	0.521
AHF62591.1	abrB	Syncc8109_0173	Syncc8109_0663	Hypothetical protein.	Transcriptional regulator AbrB.	0.433
AHF64285.1	AHF62591.1	Syncc8109_1941	Syncc8109_0173	Hypothetical protein.	Hypothetical protein.	0.759
AHF64285.1	AHF64754.1	Syncc8109_1941	Syncc8109_2445	Hypothetical protein.	Hypothetical protein.	0.745
AHF64285.1	AHF64757.1	Syncc8109_1941	Syncc8109_2448	Hypothetical protein.	ATPases involved in chromosome partitioning-like protein.	0.484
AHF64285.1	abrB	Syncc8109_1941	Syncc8109_0663	Hypothetical protein.	Transcriptional regulator AbrB.	0.755
AHF64546.1	AHF64754.1	Syncc8109_2219	Syncc8109_2445	Hypothetical protein.	Hypothetical protein.	0.493
AHF64546.1	AHF64757.1	Syncc8109_2219	Syncc8109_2448	Hypothetical protein.	ATPases involved in chromosome partitioning-like protein.	0.605
AHF64546.1	abrB	Syncc8109_2219	Syncc8109_0663	Hypothetical protein.	Transcriptional regulator AbrB.	0.417
AHF64732.1	AHF62591.1	Syncc8109_2415	Syncc8109_0173	Serum resistance locus BrkB-like protein.	Hypothetical protein.	0.413
AHF64732.1	AHF64757.1	Syncc8109_2415	Syncc8109_2448	Serum resistance locus BrkB-like protein.	ATPases involved in chromosome partitioning-like protein.	0.476
AHF64754.1	AHF62591.1	Syncc8109_2445	Syncc8109_0173	Hypothetical protein.	Hypothetical protein.	0.713
AHF64754.1	AHF64285.1	Syncc8109_2445	Syncc8109_1941	Hypothetical protein.	Hypothetical protein.	0.745
AHF64754.1	AHF64546.1	Syncc8109_2445	Syncc8109_2219	Hypothetical protein.	Hypothetical protein.	0.493
AHF64754.1	AHF64757.1	Syncc8109_2445	Syncc8109_2448	Hypothetical protein.	ATPases involved in chromosome partitioning-like protein.	0.590
AHF64756.1	AHF64757.1	Syncc8109_2447	Syncc8109_2448	Hypothetical protein.	ATPases involved in chromosome partitioning-like protein.	0.474