Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
somPutative porin; Belongs to the OprB family. (500 aa)    
Predicted Functional Partners:
AHF62678.1
Hypothetical protein.
  
     0.774
AHF62677.1
Hypothetical protein.
  
     0.772
AHF64537.1
Outer envelope membrane protein-like protein.
  
     0.748
AHF63805.1
Putative permease.
  
     0.742
AHF64665.1
Hypothetical protein.
  
     0.686
AHF62825.1
Hypothetical protein.
  
     0.671
AHF63619.1
Hypothetical protein.
  
     0.656
AHF64736.1
Putative RND family outer membrane efflux protein.
  
   
 0.654
AHF64228.1
Cell division protein FtsQ.
  
     0.653
AHF63260.1
Hypothetical protein.
  
     0.608
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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