STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crtBPhytoene synthase. (302 aa)    
Predicted Functional Partners:
crtD
Carotene 7,8-desaturase.
  
 0.996
crtE
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.946
AHF63911.1
Trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.889
chlP
Geranylgeranyl reductase.
 
 
 0.878
crtQ
Carotene 7,8-desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
 
   
 0.854
crtH
Carotenoid isomerase.
 
  
 0.853
AHF64342.1
Hypothetical protein.
 
  
 0.830
uppS
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.825
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
   
 
  0.764
rps16
30S Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 
  0.764
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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