STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbcRPutative Rubisco transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (329 aa)    
Predicted Functional Partners:
glsF
Glutamate synthase (NADPH).
  
  
 0.783
AHF64815.1
Hypothetical protein.
       0.603
psbV
Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
  
     0.578
ndhF2
Proton-translocating NADH-quinone oxidoreductase, chain L.
     
 0.567
AHF64420.1
Thioredoxin reductase.
     
 0.521
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.514
AHF64483.1
Hypothetical protein.
  
     0.494
apcB
Allophycocyanin beta chain.
  
     0.451
hflX
Putative GTP-binding protein, transporter associated; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
     
 0.431
apcF
Phycobilisome core component-allophycocyanin beta-18 subunit.
  
     0.423
Your Current Organism:
Synechococcus sp. WH 8109
NCBI taxonomy Id: 166314
Other names: S. sp. WH 8109, Synechococcus sp. WH8109
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