EHA63027.1 protein (Synechococcus sp. WH 8016)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EHA63027.1

Helicase domain protein; PFAM: Helicase, C-terminal; KEGG: pmf:P9303_08571 helicase domain-containing protein. (426 aa)

Predicted Functional Partners:

EHA59333.1

0.956

polA

0.950

rpoB

0.927

rpoA

0.927

rpoZ

0.867

EHA60243.1

0.794

hisD

0.765

EHA63262.1

0.711

EHA62460.1

0.711

EHA58557.1

0.711

Your Current Organism:

Synechococcus sp. WH 8016

NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHA58557.1	EHA63027.1	Syn8016DRAFT_2994	Syn8016DRAFT_0068	KEGG: fri:FraEuI1c_0484 putative esterase lipoprotein.	Helicase domain protein; PFAM: Helicase, C-terminal; KEGG: pmf:P9303_08571 helicase domain-containing protein.	0.711
EHA58557.1	polA	Syn8016DRAFT_2994	Syn8016DRAFT_0084	KEGG: fri:FraEuI1c_0484 putative esterase lipoprotein.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.577
EHA58557.1	rpoA	Syn8016DRAFT_2994	Syn8016DRAFT_2673	KEGG: fri:FraEuI1c_0484 putative esterase lipoprotein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.567
EHA59333.1	EHA60243.1	Syn8016DRAFT_2703	Syn8016DRAFT_2625	KEGG: pmf:P9303_22951 Rad3-related DNA helicase.	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.	0.884
EHA59333.1	EHA63027.1	Syn8016DRAFT_2703	Syn8016DRAFT_0068	KEGG: pmf:P9303_22951 Rad3-related DNA helicase.	Helicase domain protein; PFAM: Helicase, C-terminal; KEGG: pmf:P9303_08571 helicase domain-containing protein.	0.956
EHA59333.1	hisD	Syn8016DRAFT_2703	Syn8016DRAFT_2233	KEGG: pmf:P9303_22951 Rad3-related DNA helicase.	Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.	0.771
EHA59333.1	polA	Syn8016DRAFT_2703	Syn8016DRAFT_0084	KEGG: pmf:P9303_22951 Rad3-related DNA helicase.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.972
EHA59333.1	rpoA	Syn8016DRAFT_2703	Syn8016DRAFT_2673	KEGG: pmf:P9303_22951 Rad3-related DNA helicase.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.866
EHA59333.1	rpoB	Syn8016DRAFT_2703	Syn8016DRAFT_2230	KEGG: pmf:P9303_22951 Rad3-related DNA helicase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.866
EHA59333.1	rpoZ	Syn8016DRAFT_2703	Syn8016DRAFT_2155	KEGG: pmf:P9303_22951 Rad3-related DNA helicase.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.883
EHA60243.1	EHA59333.1	Syn8016DRAFT_2625	Syn8016DRAFT_2703	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.	KEGG: pmf:P9303_22951 Rad3-related DNA helicase.	0.884
EHA60243.1	EHA63027.1	Syn8016DRAFT_2625	Syn8016DRAFT_0068	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.	Helicase domain protein; PFAM: Helicase, C-terminal; KEGG: pmf:P9303_08571 helicase domain-containing protein.	0.794
EHA60243.1	hisD	Syn8016DRAFT_2625	Syn8016DRAFT_2233	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.	Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.	0.572
EHA60243.1	polA	Syn8016DRAFT_2625	Syn8016DRAFT_0084	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.965
EHA60243.1	rpoA	Syn8016DRAFT_2625	Syn8016DRAFT_2673	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.594
EHA60243.1	rpoB	Syn8016DRAFT_2625	Syn8016DRAFT_2230	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.520
EHA60243.1	rpoZ	Syn8016DRAFT_2625	Syn8016DRAFT_2155	TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.680
EHA62460.1	EHA63027.1	Syn8016DRAFT_1755	Syn8016DRAFT_0068	KEGG: fri:FraEuI1c_0484 putative esterase lipoprotein.	Helicase domain protein; PFAM: Helicase, C-terminal; KEGG: pmf:P9303_08571 helicase domain-containing protein.	0.711
EHA62460.1	polA	Syn8016DRAFT_1755	Syn8016DRAFT_0084	KEGG: fri:FraEuI1c_0484 putative esterase lipoprotein.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.577
EHA62460.1	rpoA	Syn8016DRAFT_1755	Syn8016DRAFT_2673	KEGG: fri:FraEuI1c_0484 putative esterase lipoprotein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.567