STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63036.1PFAM: Sodium:neurotransmitter symporter; KEGG: pmf:P9303_08661 putative sodium-dependent transporter, NSS family protein. (461 aa)    
Predicted Functional Partners:
EHA63244.1
Amino acid carrier protein; KEGG: pmf:P9303_21681 sodium:alanine symporter family protein; TIGRFAM: Sodium:alanine symporter; PFAM: Sodium:alanine symporter.
 
  
 0.577
EHA63034.1
Sucraseferredoxin family protein; PFAM: Sucraseferredoxin-like; KEGG: pmf:P9303_08641 ferredoxin.
       0.564
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.564
EHA62288.1
PFAM: BCCT transporter; KEGG: pmc:P9515_16031 hypothetical protein; Belongs to the BCCT transporter (TC 2.A.15) family.
  
     0.426
EHA62478.1
PFAM: Sodium/solute symporter; KEGG: amr:AM1_4939 Na+/pantothenate symporter PanF, putative; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.418
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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