Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EHA63083.1TIGRFAM: Lycopene cyclase, beta/epsilon; KEGG: pmf:P9303_09161 putative lycopene beta cyclase; PFAM: Lycopene cyclase-type, FAD-binding. (408 aa)    
Predicted Functional Partners:
EHA60648.1
Carotene 7,8-desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
 0.898
EHA63181.1
Carotene isomerase; KEGG: pmf:P9303_10011 putative carotenoid isomerase; TIGRFAM: Carotene isomerase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase.
  
  
  0.877
EHA62223.1
PFAM: Fatty acid desaturase, type 1; KEGG: pmt:PMT1816 beta carotene hydroxylase.
   
 
 0.853
EHA63974.1
PFAM: Fatty acid desaturase, type 1; KEGG: cyj:Cyan7822_5104 fatty acid desaturase.
   
 
 0.829
EHA61812.1
TIGRFAM: Magnesium protoporphyrin O-methyltransferase; KEGG: pmt:PMT2040 Mg-protoporphyrin IX methyl transferase; PFAM: Magnesium-protoporphyrin IX methyltransferase, C-terminal.
  
 
  0.799
gyrA
DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.773
EHA63283.1
PFAM: Methyltransferase type 12; KEGG: pmt:PMT0792 hypothetical protein.
    
  0.745
EHA63490.1
PFAM: Methyltransferase type 12; KEGG: pmf:P9303_18721 hypothetical protein.
    
  0.745
EHA64418.1
PFAM: Methyltransferase type 12; KEGG: pme:NATL1_17731 hypothetical protein.
    
  0.745
EHA62381.1
PFAM: Methyltransferase type 11; KEGG: pmc:P9515_14091 hypothetical protein.
    
  0.745
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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