STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63160.1KEGG: pmt:PMT1082 hypothetical protein. (82 aa)    
Predicted Functional Partners:
deaD
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
       0.623
EHA63162.1
PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; KEGG: pmt:PMT1084 sugar-phosphate nucleotidyl transferase.
       0.431
EHA63163.1
PFAM: DNA helicase, UvrD/REP type; KEGG: pmf:P9303_09631 exodeoxyribonuclease V 67 kD polypeptide; SMART: ATPase, AAA+ type, core.
       0.431
EHA63164.1
PFAM: DNA helicase, UvrD/REP type; KEGG: pmf:P9303_09621 UvrD/REP helicase subunit B.
       0.431
EHA63165.1
KEGG: pmt:PMT1089 exodeoxyribonuclease V gamma chain; TIGRFAM: Exodeoxyribonuclease V, RecC subunit.
       0.431
EHA63166.1
Metallophosphoesterase; PFAM: Metallo-dependent phosphatase; KEGG: pmt:PMT1090 serine/threonine specific protein phosphatase.
       0.431
EHA63159.1
KEGG: pmt:PMT1081 RNA-binding protein RbpD; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain.
       0.415
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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