STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63164.1PFAM: DNA helicase, UvrD/REP type; KEGG: pmf:P9303_09621 UvrD/REP helicase subunit B. (1217 aa)    
Predicted Functional Partners:
EHA63165.1
KEGG: pmt:PMT1089 exodeoxyribonuclease V gamma chain; TIGRFAM: Exodeoxyribonuclease V, RecC subunit.
 
 0.998
EHA63163.1
PFAM: DNA helicase, UvrD/REP type; KEGG: pmf:P9303_09631 exodeoxyribonuclease V 67 kD polypeptide; SMART: ATPase, AAA+ type, core.
 
 0.994
EHA63102.1
KEGG: pmf:P9303_09351 exodeoxyribonuclease V.
 
 0.925
EHA63162.1
PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; KEGG: pmt:PMT1084 sugar-phosphate nucleotidyl transferase.
       0.773
EHA63166.1
Metallophosphoesterase; PFAM: Metallo-dependent phosphatase; KEGG: pmt:PMT1090 serine/threonine specific protein phosphatase.
       0.773
deaD
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
    
  0.691
EHA60243.1
TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: pmf:P9303_21731 superfamily II DNA helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.
    
 0.633
EHA62323.1
KEGG: pmt:PMT1917 UvrD/REP helicase; TIGRFAM: DNA helicase, ATP-dependent, PcrA type; PFAM: DNA helicase, UvrD/REP type.
    
0.599
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.585
EHA63167.1
KEGG: pmf:P9303_09571 hypothetical protein.
       0.559
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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