STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63216.1PFAM: Lytic transglycosylase-like, catalytic; KEGG: pmf:P9303_13211 transglycosylase SLT domain-containing protein. (330 aa)    
Predicted Functional Partners:
EHA63214.1
PFAM: Aminoglycoside phosphotransferase; KEGG: pmt:PMT0868 hypothetical protein.
    
  0.757
EHA63215.1
KEGG: pmf:P9303_13271 hypothetical protein.
       0.714
EHA63027.1
Helicase domain protein; PFAM: Helicase, C-terminal; KEGG: pmf:P9303_08571 helicase domain-containing protein.
  
     0.653
EHA62204.1
KEGG: pmf:P9303_07051 hypothetical protein.
  
     0.650
EHA63213.1
Metallophosphoesterase; PFAM: Metallo-dependent phosphatase; KEGG: pmf:P9303_13291 DNA repair exonuclease.
 
 
   0.617
EHA62251.1
KEGG: pmf:P9303_24661 hypothetical protein.
  
     0.584
EHA63217.1
KEGG: pmt:PMT0874 hypothetical protein.
       0.581
vapC-4
PIN domain protein family protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.570
vapC-3
PIN domain protein family protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.565
EHA64255.1
PFAM: Carbohydrate-selective porin OprB; KEGG: pmf:P9303_19511 hypothetical protein; Belongs to the OprB family.
  
     0.564
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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