STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63229.1KEGG: pmf:P9303_12141 ABC transporter for amino acids, membrane component; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component. (299 aa)    
Predicted Functional Partners:
EHA63230.1
ABC-type transporter, periplasmic subunit family 3; KEGG: pmf:P9303_12151 ABC transporter for amino acids, substrate binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.
 
 
 0.995
EHA63226.1
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmt:PMT0893 ABC transporter for amino acids, ATP binding component; SMART: ATPase, AAA+ type, core.
 
 
 0.993
EHA63227.1
KEGG: pmf:P9303_12111 ABC transporter for amino acids, membrane component; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component.
 
 
0.990
EHA63228.1
KEGG: pmf:P9303_12131 hypothetical protein.
       0.697
EHA63231.1
Hypothetical protein.
       0.568
EHA58597.1
KEGG: tkm:TK90_1582 protein of unknown function UPF0126; PFAM: Uncharacterised protein family UPF0126; Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.
  
 
 0.548
EHA63907.1
ABC-type transporter, periplasmic subunit family 3; KEGG: pmt:PMT0515 GIC family ligand gated channel; PFAM: Extracellular solute-binding protein, family 3; Ion transport 2; SMART: Ionotropic glutamate receptor; Extracellular solute-binding protein, family 3.
  
 
 0.481
EHA62496.1
ABC-type transporter, periplasmic subunit family 3; KEGG: pmt:PMT0515 GIC family ligand gated channel; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.
  
 
 0.481
EHA60450.1
ABC-type transporter, periplasmic subunit family 3; KEGG: pmt:PMT1517 ABC transporter solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.
  
 
 0.481
EHA63054.1
ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: pmt:PMT1145 ABC transporter substrate-binding protein.
  
  
  0.445
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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