STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63299.1PFAM: Peptidase U32; KEGG: cya:CYA_0765 U32 family peptidase. (855 aa)    
Predicted Functional Partners:
EHA63298.1
PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: pmf:P9303_16751 putative carboxypeptidase.
       0.783
EHA62193.1
PFAM: Methyltransferase type 11; KEGG: pmf:P9303_17011 glycine-sarcosine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Glycine N-methyltransferase family.
  
  
 0.737
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
   
 
  0.685
EHA63300.1
GTP-binding protein TypA; KEGG: pmt:PMT0575 tyrosine binding protein; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal.
  
    0.666
EHA63301.1
PFAM: Protein of unknown function DUF309; KEGG: pmf:P9303_16771 hypothetical protein.
       0.580
EHA63297.1
TIGRFAM: Geranylgeranyl reductase, plant/cyanobacteria; Geranylgeranyl reductase; Geranylgeranyl reductase, plant/prokaryotic; KEGG: pmj:P9211_10031 aromatic-ring hydroxylase (flavoprotein monooxygenase).
       0.545
EHA63302.1
OstA family protein; PFAM: Organic solvent tolerance-like, N-terminal; KEGG: pmt:PMT0573 hypothetical protein.
       0.488
EHA63303.1
Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmf:P9303_16791 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
       0.488
EHA63304.1
PFAM: Permease YjgP/YjgQ, predicted; KEGG: pmf:P9303_16801 putative permease.
       0.488
ccsA
Cytochrome c biogenesis protein ccsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
  
    0.485
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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