STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63304.1PFAM: Permease YjgP/YjgQ, predicted; KEGG: pmf:P9303_16801 putative permease. (392 aa)    
Predicted Functional Partners:
EHA63303.1
Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmf:P9303_16791 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
 
 0.999
EHA63368.1
Protein of unknown function DUF1239; PFAM: Lipopolysccharide assembly, LptC-related; KEGG: pmf:P9303_14731 hypothetical protein.
   
 0.990
EHA63302.1
OstA family protein; PFAM: Organic solvent tolerance-like, N-terminal; KEGG: pmt:PMT0573 hypothetical protein.
    
 0.980
EHA64402.1
PFAM: Bacterial surface antigen (D15); Surface antigen variable number; Polypeptide-transport-associated, ShlB-type; KEGG: pmf:P9303_05491 outer envelope membrane protein.
 
     0.786
EHA62243.1
KEGG: pmt:PMT1833 hypothetical protein.
 
     0.775
EHA62242.1
KEGG: pmf:P9303_24571 hypothetical protein.
 
     0.764
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
     0.760
EHA61750.1
S-layer domain-containing protein; PFAM: S-layer homology domain; Carbohydrate-selective porin OprB; KEGG: pmf:P9303_26321 porin; Belongs to the OprB family.
  
     0.758
EHA64399.1
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.757
EHA59079.1
S-layer domain-containing protein; PFAM: S-layer homology domain; KEGG: pmt:PMT1979 porin; Belongs to the OprB family.
  
     0.748
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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