STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63357.1KEGG: syn:slr0069 hypothetical protein. (237 aa)    
Predicted Functional Partners:
EHA63356.1
PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: syn:sll0051 hypothetical protein.
 
     0.805
EHA63358.1
KEGG: nha:Nham_3087 outer membrane autotransporter barrel.
       0.773
EHA58642.1
KEGG: syn:slr1774 hypothetical protein.
  
     0.617
EHA63359.1
KEGG: fph:Fphi_1292 hypothetical protein.
       0.513
EHA63360.1
Hypothetical protein.
       0.513
EHA63361.1
PFAM: FAD linked oxidase, N-terminal; KEGG: rha:RHA1_ro02803 oxidase.
       0.513
EHA63363.1
PFAM: Carbohydrate-selective porin OprB; KEGG: syn:slr1163 hypothetical protein; Belongs to the OprB family.
  
     0.467
psaK
TIGRFAM: Photosystem I PsaK, reaction centre; HAMAP: Photosystem I PsaK, reaction centre; KEGG: cyt:cce_0400 photosystem I reaction center subunit X; PFAM: Photosystem I PsaG/PsaK protein.
  
     0.432
EHA60450.1
ABC-type transporter, periplasmic subunit family 3; KEGG: pmt:PMT1517 ABC transporter solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.
  
     0.420
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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