STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63384.1SpoIID/LytB domain protein; KEGG: pmf:P9303_14861 hypothetical protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal. (310 aa)    
Predicted Functional Partners:
EHA63383.1
PFAM: ATP adenylyltransferase, C-terminal; KEGG: pmt:PMT0732 putative ATP adenylyltransferase.
       0.801
EHA63438.1
KEGG: pmf:P9303_15321 hypothetical protein; TIGRFAM: Polysaccharide pyruvyl transferase, CsaB; PFAM: Polysaccharide pyruvyl transferase.
  
     0.666
EHA63382.1
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: pmf:P9303_14841 hypothetical protein; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2.
       0.631
EHA63385.1
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pmi:PMT9312_0409 putative short chain dehydrogenase.
       0.559
EHA62230.1
KEGG: pmf:P9303_24401 bicarbonate transporter, ICT family protein; TIGRFAM: Inorganic carbon transporter; PFAM: O-antigen ligase-related.
  
     0.413
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.