STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63402.1PFAM: Domain of unknown function DUF1995; KEGG: pmf:P9303_15001 hypothetical protein. (217 aa)    
Predicted Functional Partners:
EHA63401.1
KEGG: pmf:P9303_14991 hypothetical protein.
 
     0.835
EHA63400.1
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; KEGG: pmf:P9303_14981 putative D-Ala-D-Ala carboxypeptidase 3 (S13) family protein; TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C.
       0.800
thf1
Protein thf1; May be involved in photosynthetic membrane biogenesis.
  
     0.763
EHA64190.1
PFAM: Protein of unknown function DUF1092; KEGG: pmt:PMT1234 hypothetical protein.
  
     0.761
EHA64295.1
KEGG: pmf:P9303_06101 hypothetical protein.
  
     0.755
EHA64226.1
KEGG: pmf:P9303_07351 hypothetical protein.
  
     0.741
EHA63286.1
KEGG: pmf:P9303_14221 hypothetical protein.
  
     0.739
EHA63626.1
PFAM: Protein of unknown function DUF1350; KEGG: pmt:PMT0388 hypothetical protein.
  
     0.739
EHA59355.1
KEGG: pmf:P9303_22651 hypothetical protein.
  
     0.738
EHA59415.1
PFAM: Ferredoxin; KEGG: pmt:PMT1664 ferredoxin.
  
     0.738
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.