STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63409.1N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; KEGG: pmt:PMT0712 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2. (306 aa)    
Predicted Functional Partners:
EHA60643.1
PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: pmf:P9303_26161 beta-N-acetylglucosaminidase.
    
 0.793
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
     
 0.791
EHA63410.1
KEGG: pmf:P9303_15101 PDZ domain-containing protein; PFAM: Peptidase M61; SMART: PDZ/DHR/GLGF.
       0.784
EHA63411.1
KEGG: cyb:CYB_1143 hypothetical protein.
       0.773
EHA62061.1
Porin; KEGG: pmf:P9303_26321 porin; Belongs to the OprB family.
  
 
 0.759
EHA60366.1
KEGG: pmt:PMT1440 hypothetical protein.
  
     0.759
EHA64110.1
KEGG: syf:Synpcc7942_0716 hypothetical protein.
  
     0.758
EHA63620.1
KEGG: pmf:P9303_18931 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic.
     
 0.757
EHA63716.1
Hypothetical protein; KEGG: syf:Synpcc7942_0136 phage integrase.
  
     0.753
EHA64198.1
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: pmf:P9303_07651 phage integrase family.
  
     0.752
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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