EHA63503.1 protein (Synechococcus sp. WH 8016)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EHA63503.1

KEGG: pmt:PMT0658 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core. (261 aa)

Predicted Functional Partners:

EHA64151.1

0.567

EHA63437.1

0.467

EHA60475.1

0.402

Your Current Organism:

Synechococcus sp. WH 8016

NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHA60475.1	EHA63437.1	Syn8016DRAFT_2262	Syn8016DRAFT_0478	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_03901 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_15311 ABC transporter for sugars, ATP binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	0.542
EHA60475.1	EHA63503.1	Syn8016DRAFT_2262	Syn8016DRAFT_0544	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_03901 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	KEGG: pmt:PMT0658 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.	0.402
EHA60475.1	EHA64151.1	Syn8016DRAFT_2262	Syn8016DRAFT_1194	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_03901 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmf:P9303_17671 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.	0.628
EHA63437.1	EHA60475.1	Syn8016DRAFT_0478	Syn8016DRAFT_2262	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_15311 ABC transporter for sugars, ATP binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_03901 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	0.542
EHA63437.1	EHA63503.1	Syn8016DRAFT_0478	Syn8016DRAFT_0544	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_15311 ABC transporter for sugars, ATP binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	KEGG: pmt:PMT0658 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.	0.467
EHA63437.1	EHA64151.1	Syn8016DRAFT_0478	Syn8016DRAFT_1194	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_15311 ABC transporter for sugars, ATP binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmf:P9303_17671 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.	0.626
EHA63503.1	EHA60475.1	Syn8016DRAFT_0544	Syn8016DRAFT_2262	KEGG: pmt:PMT0658 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_03901 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	0.402
EHA63503.1	EHA63437.1	Syn8016DRAFT_0544	Syn8016DRAFT_0478	KEGG: pmt:PMT0658 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_15311 ABC transporter for sugars, ATP binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	0.467
EHA63503.1	EHA64151.1	Syn8016DRAFT_0544	Syn8016DRAFT_1194	KEGG: pmt:PMT0658 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.	Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmf:P9303_17671 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.	0.567
EHA64151.1	EHA60475.1	Syn8016DRAFT_1194	Syn8016DRAFT_2262	Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmf:P9303_17671 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_03901 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	0.628
EHA64151.1	EHA63437.1	Syn8016DRAFT_1194	Syn8016DRAFT_0478	Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmf:P9303_17671 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: pmf:P9303_15311 ABC transporter for sugars, ATP binding protein; SMART: ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily.	0.626
EHA64151.1	EHA63503.1	Syn8016DRAFT_1194	Syn8016DRAFT_0544	Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmf:P9303_17671 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.	KEGG: pmt:PMT0658 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.	0.567