STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63566.1PFAM: Alanine racemase, N-terminal; KEGG: ppr:PBPRB1850 amino acid racemase. (368 aa)    
Predicted Functional Partners:
EHA63567.1
PFAM: Protein of unknown function DUF1611; KEGG: dsh:Dshi_2299 hypothetical protein.
 
     0.936
EHA63568.1
KEGG: elm:ELI_0150 hypothetical protein.
       0.569
EHA62969.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
    
  0.499
EHA63841.1
Aspartate transaminase; KEGG: pmt:PMT0779 aminotransferase class-I; PFAM: Aminotransferase, class I/classII.
     
 0.490
EHA64306.1
KEGG: pmt:PMT1360 aminotransferase class-I; PFAM: Aminotransferase, class I/classII.
     
 0.490
dapL
LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate.
     
 0.490
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.472
EHA63647.1
Arginase; KEGG: cpi:Cpin_6292 arginase/agmatinase/formiminoglutamase; PFAM: Ureohydrolase; EF-hand; Belongs to the arginase family.
  
  
  0.428
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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