STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63661.1Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: pmf:P9303_16391 permease; overlaps another CDS with the same product name. (359 aa)    
Predicted Functional Partners:
EHA63662.1
Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: pmf:P9303_16401 permease; overlaps another CDS with the same product name.
 
    
0.818
psb28
TIGRFAM: Photosystem II Psb28, class 1; HAMAP: Photosystem II Psb28, class 1; KEGG: pmf:P9303_16381 photosystem II reaction center protein Psb28; PFAM: Photosystem II Psb28, class 1; Belongs to the Psb28 family.
       0.812
EHA63659.1
KEGG: pmt:PMT0605 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese-like.
       0.694
EHA61809.1
Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: pmt:PMT2030 hypothetical protein.
  
     0.642
EHA63658.1
GUN4 domain protein; PFAM: GUN4-like; KEGG: pmt:PMT0606 hypothetical protein.
 
     0.578
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
    
  0.498
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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