STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63676.1KEGG: pmt:PMT0627 hypothetical protein. (145 aa)    
Predicted Functional Partners:
EHA63675.1
PFAM: Pentapeptide repeat; KEGG: pmt:PMT0626 hypothetical protein.
       0.773
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.682
EHA63674.1
KEGG: jan:Jann_4029 hypothetical protein.
       0.655
EHA63678.1
Lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; KEGG: mbr:MONBRDRAFT_22465 hypothetical protein.
       0.577
EHA63673.1
PFAM: Uncharacterised protein family UPF0102; KEGG: pmf:P9303_16141 hypothetical protein; Belongs to the UPF0102 family.
       0.469
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.