EHA63778.1 protein (Synechococcus sp. WH 8016)

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EHA63778.1

TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299. (345 aa)

Predicted Functional Partners:

rpsI

0.827

rpsO

0.823

rpsR

0.819

rpsQ

0.815

rpsC

0.815

EHA64296.1

0.778

uvrC

0.750

ruvB

0.750

ruvA

0.747

ruvC

0.745

Your Current Organism:

Synechococcus sp. WH 8016

NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHA63778.1	EHA64296.1	Syn8016DRAFT_0819	Syn8016DRAFT_1339	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.778
EHA63778.1	rpsC	Syn8016DRAFT_0819	Syn8016DRAFT_2689	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.815
EHA63778.1	rpsI	Syn8016DRAFT_0819	Syn8016DRAFT_2668	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	PFAM: Ribosomal protein S9; KEGG: pmt:PMT1759 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.827
EHA63778.1	rpsO	Syn8016DRAFT_0819	Syn8016DRAFT_0742	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.823
EHA63778.1	rpsQ	Syn8016DRAFT_0819	Syn8016DRAFT_2686	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.815
EHA63778.1	rpsR	Syn8016DRAFT_0819	Syn8016DRAFT_0414	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.819
EHA63778.1	ruvA	Syn8016DRAFT_0819	Syn8016DRAFT_0741	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	Holliday junction ATP-dependent DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.	0.747
EHA63778.1	ruvB	Syn8016DRAFT_0819	Syn8016DRAFT_1734	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.	0.750
EHA63778.1	ruvC	Syn8016DRAFT_0819	Syn8016DRAFT_0111	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.745
EHA63778.1	uvrC	Syn8016DRAFT_0819	Syn8016DRAFT_0438	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.	0.750
EHA64296.1	EHA63778.1	Syn8016DRAFT_1339	Syn8016DRAFT_0819	Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	0.778
EHA64296.1	rpsI	Syn8016DRAFT_1339	Syn8016DRAFT_2668	Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	PFAM: Ribosomal protein S9; KEGG: pmt:PMT1759 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.672
EHA64296.1	rpsR	Syn8016DRAFT_1339	Syn8016DRAFT_0414	Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.442
EHA64296.1	ruvA	Syn8016DRAFT_1339	Syn8016DRAFT_0741	Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	Holliday junction ATP-dependent DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.	0.929
EHA64296.1	ruvB	Syn8016DRAFT_1339	Syn8016DRAFT_1734	Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.	0.929
EHA64296.1	ruvC	Syn8016DRAFT_1339	Syn8016DRAFT_0111	Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	Crossover junction endodeoxyribonuclease ruvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.929
EHA64296.1	uvrC	Syn8016DRAFT_1339	Syn8016DRAFT_0438	Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.	0.933
rpsC	EHA63778.1	Syn8016DRAFT_2689	Syn8016DRAFT_0819	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: cyj:Cyan7822_0471 phage/plasmid-like protein TIGR03299.	0.815
rpsC	rpsI	Syn8016DRAFT_2689	Syn8016DRAFT_2668	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	PFAM: Ribosomal protein S9; KEGG: pmt:PMT1759 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsC	rpsO	Syn8016DRAFT_2689	Syn8016DRAFT_0742	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999