STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63845.1Carboxyl-terminal protease; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: pmf:P9303_14351 carboxyl-terminal processing protease; SMART: Peptidase S41; PDZ/DHR/GLGF; Belongs to the peptidase S41A family. (450 aa)    
Predicted Functional Partners:
EHA63072.1
KEGG: pmf:P9303_08961 hypothetical protein.
   
  0.911
EHA63843.1
KEGG: tel:tll1956 hypothetical protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like.
  
    0.749
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.692
pheT
TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: pmf:P9303_14801 phenylalanyl-tRNA synthetase subunit beta; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial.
   
 
 0.665
EHA64289.1
TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: pmf:P9303_06051 membrane-associated Zn-dependent proteases 1; SMART: PDZ/DHR/GLGF.
  
  
 0.607
EHA63842.1
KEGG: pmj:P9211_07881 hypothetical protein.
       0.600
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
  0.584
EHA63841.1
Aspartate transaminase; KEGG: pmt:PMT0779 aminotransferase class-I; PFAM: Aminotransferase, class I/classII.
    
  0.576
EHA63840.1
TIGRFAM: Phosphonate-binding periplasmic protein; KEGG: pmt:PMT0780 phosphonate ABC transporter phosphonate-binding protein.
       0.455
EHA63838.1
KEGG: pmt:PMT0782 putative phosphonate ABC transporter.
       0.454
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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