STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA63925.1PFAM: Protein of unknown function DUF318, transmembrane; KEGG: pmt:PMT2207 permease. (319 aa)    
Predicted Functional Partners:
EHA63924.1
KEGG: pmf:P9303_29311 hypothetical protein.
 
  
 0.969
EHA63923.1
KEGG: pmf:P9303_29301 hypothetical protein.
       0.787
EHA63922.1
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmj:P9211_15231 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
       0.785
EHA63926.1
PFAM: Cytochrome c, class I; KEGG: pmf:P9303_17581 cytochrome c, class IC:cytochrome c, class I.
       0.741
EHA63921.1
ABC-type transporter, integral membrane subunit; PFAM: ABC-3; KEGG: pmf:P9303_29261 ABC transporter.
       0.701
EHA63920.1
ABC-type metal ion transporter, periplasmic subunit; PFAM: ABC transporter metal-binding lipoprotein; KEGG: pmf:P9303_29281 ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
       0.576
EHA63025.1
TIGRFAM: Thioredoxin reductase; KEGG: pma:Pro1245 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Thioredoxin domain.
     
 0.483
EHA63919.1
KEGG: pmt:PMT2204 hypothetical protein.
       0.473
EHA63928.1
KEGG: ccs:CCNA_01348 hypothetical protein.
 
     0.452
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
    0.428
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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