STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHA63974.1PFAM: Fatty acid desaturase, type 1; KEGG: cyj:Cyan7822_5104 fatty acid desaturase. (248 aa)    
Predicted Functional Partners:
EHA62223.1
PFAM: Fatty acid desaturase, type 1; KEGG: pmt:PMT1816 beta carotene hydroxylase.
     
 0.882
EHA63973.1
PFAM: Orange carotenoid-binding protein, N-terminal; Nuclear transport factor 2; KEGG: cyc:PCC7424_4467 orange carotenoid protein.
 
     0.880
EHA63083.1
TIGRFAM: Lycopene cyclase, beta/epsilon; KEGG: pmf:P9303_09161 putative lycopene beta cyclase; PFAM: Lycopene cyclase-type, FAD-binding.
   
 
 0.829
EHA63975.1
KEGG: mar:MAE_18920 hypothetical protein.
       0.686
EHA63972.1
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rmu:RMDY18_03750 dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.628
EHA61818.1
PFAM: Protein of unknown function DUF456; KEGG: pmt:PMT2047 hypothetical protein.
  
     0.562
EHA61778.1
Phytoene synthase; KEGG: pmj:P9211_01581 squalene and phytoene synthase; PFAM: Squalene/phytoene synthase.
     
 0.538
EHA62487.1
PFAM: Domain of unknown function DUF305; KEGG: syf:Synpcc7942_B2645 hypothetical protein.
  
     0.515
EHA63991.1
KEGG: pme:NATL1_11941 hypothetical protein.
  
     0.498
EHA62472.1
KR domain protein; KEGG: gvi:gll4226 modular polyketide synthase; PFAM: Polyketide synthase, KR; SMART: Polyketide synthase/Fatty acid synthase, KR.
 
  
 0.493
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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