Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EHA64037.1KEGG: pmf:P9303_18561 M3 family peptidase; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F. (705 aa)    
Predicted Functional Partners:
EHA64036.1
TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: pmf:P9303_18571 NAD(P)H-quinone oxidoreductase subunit 4; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase.
  
    0.816
EHA64038.1
KEGG: pmt:PMT0429 arginine repressor domain-containing protein.
       0.757
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
       0.673
EHA64034.1
Glucokinase; KEGG: pmf:P9303_18591 putative glucokinase; PFAM: Glucokinase; Belongs to the bacterial glucokinase family.
       0.651
EHA59338.1
KEGG: pmf:P9303_22901 hypothetical protein.
     
  0.628
thrS
TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; Anticodon-binding; KEGG: ppp:PHYPADRAFT_130801 hypothetical protein; SMART: Threonyl/alanyl tRNA synthetase, SAD; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.530
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
   0.512
EHA64033.1
PFAM: Protein of unknown function DUF1824; KEGG: pmt:PMT0201 hypothetical protein.
       0.423
rplD
Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.
    
  0.401
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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