STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA64121.1PFAM: Protein of unknown function DUF1232; KEGG: pmt:PMT0457 hypothetical protein. (124 aa)    
Predicted Functional Partners:
EHA64122.1
KEGG: pmt:PMT0458 hypothetical protein.
       0.800
EHA61994.1
PFAM: Protein of unknown function DUF2227, metal-binding; KEGG: pmf:P9303_29371 hypothetical protein.
   
    0.797
EHA64123.1
KEGG: pmt:PMT0459 hypothetical protein.
       0.639
EHA64124.1
KEGG: pmt:PMT0460 hypothetical protein.
       0.639
EHA64120.1
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.616
EHA64119.1
PFAM: Protein of unknown function DUF2214, membrane; KEGG: pmt:PMT0455 hypothetical protein.
 
     0.503
EHA61860.1
KEGG: rlt:Rleg2_5110 HupE/UreJ protein.
  
     0.424
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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