STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA64166.1KEGG: pmj:P9211_05511 carboxysome shell protein CsoS1; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria. (103 aa)    
Predicted Functional Partners:
EHA64161.1
KEGG: pmf:P9303_08131 putative carboxysome peptide A; TIGRFAM: Carboxysome peptide A; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
 
 
 0.955
EHA64160.1
KEGG: pmt:PMT1200 putative carboxysome peptide B; TIGRFAM: Carboxysome peptide B; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml.
 
 
 
 0.948
EHA64168.1
KEGG: pmf:P9303_08041 hypothetical protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria.
 
 
 
 0.908
cbbL
Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.841
EHA64164.1
PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: pmj:P9211_05531 ribulose bisphosphate carboxylase, small chain; SMART: Ribulose bisphosphate carboxylase, small chain.
   
 
 0.791
EHA64162.1
KEGG: pmf:P9303_08121 carboxysome shell protein CsoS3; TIGRFAM: Carboxysome shell carbonic anhydrase; PFAM: Carboxysome shell carbonic anhydrase.
 
   
 0.660
EHA64163.1
KEGG: pmt:PMT1203 carboxysome shell protein CsoS2.
 
   
 0.638
EHA64155.1
KEGG: pmt:PMT1198 hypothetical protein.
 
     0.521
EHA64157.1
TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: gvi:gvip277 NAD(P)H-quinone oxidoreductase subunit D4; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase.
     
 0.462
EHA64158.1
TIGRFAM: NAD(P)H dehydrogenase, subunit NdhF3; KEGG: cyn:Cyan7425_1619 NAD(P)H-quinone oxidoreductase subunit F; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase.
     
 0.456
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.