STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA62223.1PFAM: Fatty acid desaturase, type 1; KEGG: pmt:PMT1816 beta carotene hydroxylase. (339 aa)    
Predicted Functional Partners:
EHA63083.1
TIGRFAM: Lycopene cyclase, beta/epsilon; KEGG: pmf:P9303_09161 putative lycopene beta cyclase; PFAM: Lycopene cyclase-type, FAD-binding.
   
 
 0.869
EHA58618.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pmf:P9303_11831 zeta-carotene desaturase-like protein.
     
 0.865
EHA63329.1
KEGG: pmt:PMT0769 hypothetical protein.
  
     0.770
EHA62227.1
KEGG: pmt:PMT1818 hypothetical protein.
  
     0.763
EHA63241.1
KEGG: pmf:P9303_13831 hypothetical protein.
  
     0.750
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.746
EHA60360.1
KEGG: pmf:P9303_05231 hypothetical protein.
  
     0.746
EHA59332.1
KEGG: pmf:P9303_22961 hypothetical protein.
  
     0.740
EHA64047.1
PFAM: Protein of unknown function DUF2518; KEGG: pmf:P9303_18421 hypothetical protein.
  
     0.733
EHA60156.1
KEGG: pmf:P9303_20651 hypothetical protein.
  
     0.719
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.