STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (237 aa)    
Predicted Functional Partners:
EHA62230.1
KEGG: pmf:P9303_24401 bicarbonate transporter, ICT family protein; TIGRFAM: Inorganic carbon transporter; PFAM: O-antigen ligase-related.
       0.806
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.792
serS
Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
   
 
 0.786
EHA62228.1
Protein of unknown function DUF1745; KEGG: pmf:P9303_24381 hypothetical protein; PFAM: FIST domain, N-terminal; FIST C domain; SMART: FIST domain, N-terminal.
       0.786
EHA62231.1
PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: pmf:P9303_24411 N-acetylglucosamine kinase.
       0.783
EHA60159.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.695
EHA62227.1
KEGG: pmt:PMT1818 hypothetical protein.
 
     0.647
tilS
tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
  
  
 0.584
EHA63376.1
RNA methyltransferase, TrmA family; KEGG: pmf:P9303_14811 SAM-dependent methyltransferase; TIGRFAM: 23S rRNA methyltransferase/RumA; PFAM: Methyltransferase small; Deoxyribonuclease/rho motif-related TRAM; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
  
 0.568
EHA62226.1
KEGG: pmj:P9211_02621 hypothetical protein.
       0.564
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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