STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA62266.1KEGG: syf:Synpcc7942_0398 hypothetical protein. (153 aa)    
Predicted Functional Partners:
EHA62201.1
PFAM: Photosystem II PsbO, manganese-stabilising; KEGG: syf:Synpcc7942_0294 photosystem II manganese-stabilizing polypeptide.
  
     0.772
EHA60567.1
Ferredoxin thioredoxin reductase beta chain; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin.
  
     0.772
psb27
Photosystem II protein Psb27; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.771
EHA63352.1
KEGG: pmf:P9303_14701 beta-propeller domain-containing protein.
  
     0.768
EHA64295.1
KEGG: pmf:P9303_06101 hypothetical protein.
  
     0.767
EHA61783.1
KEGG: pmt:PMT2008 hypothetical protein.
  
     0.764
EHA64351.1
PFAM: Photosystem I PsaF, reaction centre subunit III; KEGG: syf:Synpcc7942_1250 photosystem I reaction center subunit III precursor.
  
     0.758
psb28
TIGRFAM: Photosystem II Psb28, class 1; HAMAP: Photosystem II Psb28, class 1; KEGG: pmf:P9303_16381 photosystem II reaction center protein Psb28; PFAM: Photosystem II Psb28, class 1; Belongs to the Psb28 family.
  
     0.750
EHA61779.1
TIGRFAM: Phytoene desaturase; KEGG: pmt:PMT2004 phytoene desaturase; PFAM: Amine oxidase.
  
     0.749
EHA60372.1
PFAM: Ferredoxin thioredoxin reductase, alpha chain; KEGG: syn:ssr0330 ferredoxin-thioredoxin reductase, variable chain.
  
     0.749
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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