Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vapC-2PIN domain protein family protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (148 aa)    
Predicted Functional Partners:
EHA62360.1
PFAM: CopG-like DNA-binding; KEGG: sme:SM_b20413 hypothetical protein.
       0.775
EHA64255.1
PFAM: Carbohydrate-selective porin OprB; KEGG: pmf:P9303_19511 hypothetical protein; Belongs to the OprB family.
  
     0.616
EHA62204.1
KEGG: pmf:P9303_07051 hypothetical protein.
  
     0.590
EHA62251.1
KEGG: pmf:P9303_24661 hypothetical protein.
  
     0.557
vapC-3
PIN domain protein family protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
    
0.538
EHA64046.1
PFAM: Protein of unknown function DUF490; KEGG: pmt:PMT0438 hypothetical protein.
  
     0.519
EHA64336.1
KEGG: pmf:P9303_06541 ADP-heptose:LPS heptosyltransferase.
  
     0.509
EHA64141.1
PFAM: Putative ParB-like nuclease; KEGG: pmf:P9303_13631 hypothetical protein.
  
     0.508
EHA63150.1
TIGRFAM: NHPM bacteriocin system secretion protein, HylD; KEGG: ana:all2022 hypothetical protein.
  
     0.507
EHA62358.1
TrkA-C domain protein; PFAM: Regulator of K+ conductance, C-terminal; Divalent ion symporter; KEGG: pmf:P9303_02561 putative sodium/sulfate transporter, DASS family.
       0.506
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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