STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA62421.1KEGG: pmc:P9515_13871 hypothetical protein; PFAM: Dual specificity phosphatase, catalytic domain; SMART: Dual specificity phosphatase, subgroup, catalytic domain. (163 aa)    
Predicted Functional Partners:
EHA60371.1
KEGG: syf:Synpcc7942_1129 hypothetical protein.
    
 0.962
EHA60179.1
TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein LepA; KEGG: pmt:PMT0257 GTP-binding protein LepA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein LepA, C-terminal.
    
  0.864
EHA63582.1
PFAM: Putative endonuclease, Z1 domain; KEGG: pmi:PMT9312_0373 endonuclease.
    
 0.830
EHA63640.1
Small GTP-binding protein; KEGG: pmf:P9303_16501 GTPase SAR1 and related small G proteins; TIGRFAM: Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related.
    
 0.830
EHA62460.1
KEGG: fri:FraEuI1c_0484 putative esterase lipoprotein.
    
 0.820
EHA58557.1
KEGG: fri:FraEuI1c_0484 putative esterase lipoprotein.
    
 0.820
EHA62420.1
Capsular exopolysaccharide family; TIGRFAM: Exopolysaccharide synthesis protein; KEGG: pmc:P9515_13861 hypothetical protein; PFAM: Lipopolysaccharide biosynthesis.
   
   0.815
EHA62422.1
Hypothetical protein.
       0.773
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
 
 0.714
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.673
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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