STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA62525.1PFAM: Secretion protein HlyD; KEGG: pmf:P9303_00851 transporter component. (386 aa)    
Predicted Functional Partners:
EHA62524.1
Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; SMART: ATPase, AAA+ type, core; Cyclic nucleotide-binding domain; TIGRFAM: ATPase, type I secretion system, HlyB; KEGG: pmt:PMT0077 multidrug ABC transporter; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; Cyclic nucleotide-binding domain.
 
 0.967
EHA62523.1
KEGG: pmt:PMT0078 hypothetical protein.
 
     0.844
EHA63152.1
PFAM: Outer membrane efflux protein; KEGG: syf:Synpcc7942_1761 hypothetical protein.
  
 0.798
EHA60620.1
PFAM: Outer membrane efflux protein; KEGG: pmt:PMT0182 RND family outer membrane efflux protein.
  
 0.791
EHA62214.1
PFAM: Outer membrane efflux protein; KEGG: pmt:PMT0980 outer membrane efflux protein.
  
 0.738
EHA62526.1
PFAM: Hemolysin-type calcium-binding repeat; KEGG: cyc:PCC7424_1242 hemolysin-type calcium-binding region.
  
 
 0.652
EHA62216.1
Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane domain; KEGG: pmt:PMT0978 multidrug ABC transporter; SMART: ATPase, AAA+ type, core; overlaps another CDS with the same product name.
   
 0.648
EHA62217.1
Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: pmt:PMT0977 multidrug ABC transporter; SMART: ATPase, AAA+ type, core; overlaps another CDS with the same product name.
   
 0.648
EHA62332.1
Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; KEGG: pmt:PMT1929 ABC transporter transmembrane region:ATP/GTP-binding site; SMART: ATPase, AAA+ type, core.
   
 0.648
EHA60587.1
Efflux transporter, RND family, MFP subunit; KEGG: pmf:P9303_02661 membrane-fusion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.638
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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