STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA61776.1Polynucleotide adenylyltransferase region; PFAM: Poly A polymerase, head domain; KEGG: pmt:PMT2001 poly A polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (405 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.840
EHA58635.1
KEGG: amr:AM1_1309 putative lipid kinase; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain.
  
  
 0.765
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
    0.688
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.643
EHA61775.1
Putative Ycf34; KEGG: pmf:P9303_26601 putative Ycf34.
       0.622
EHA64296.1
Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
 
  0.619
EHA61777.1
RNP-1 like RNA-binding protein; KEGG: pmf:P9303_26631 RNA recognition motif-containing protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain.
       0.619
EHA61774.1
Universal protein YeaZ; KEGG: pmt:PMT1999 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease.
       0.597
EHA61773.1
PFAM: Domain of unknown function DUF218; KEGG: pmf:P9303_26581 hypothetical protein.
       0.587
EHA59265.1
Ribonuclease, Rne/Rng family; SMART: RNA-binding domain, S1; TIGRFAM: Ribonuclease E/G; KEGG: pmt:PMT1789 ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain.
    
 0.544
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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