Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EHA61872.1KEGG: pmf:P9303_27851 hypothetical protein. (326 aa)    
Predicted Functional Partners:
EHA61870.1
KEGG: pmt:PMT2097 hypothetical protein.
       0.773
EHA61871.1
PFAM: Fimbrial assembly; KEGG: pmf:P9303_27861 hypothetical protein.
       0.773
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.773
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.773
EHA61875.1
KEGG: pmf:P9303_27821 hypothetical protein.
       0.557
EHA61869.1
PFAM: Type II/III secretion system; NolW-like; KEGG: pmt:PMT2098 general (type II) secretion pathway protein D precursor; Belongs to the bacterial secretin family.
       0.554
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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