EHA61996.1 protein (Synechococcus sp. WH 8016)

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EHA61996.1

PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein. (144 aa)

Predicted Functional Partners:

rplU

0.962

rplT

0.896

rplS

0.888

rplQ

0.888

rpmF

0.887

rplB

0.887

rpsP

0.884

rpmA

0.880

rplI

0.868

rplC

0.868

Your Current Organism:

Synechococcus sp. WH 8016

NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHA61996.1	rplB	Syn8016DRAFT_2068	Syn8016DRAFT_2692	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.887
EHA61996.1	rplC	Syn8016DRAFT_2068	Syn8016DRAFT_2695	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.868
EHA61996.1	rplI	Syn8016DRAFT_2068	Syn8016DRAFT_2024	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.868
EHA61996.1	rplQ	Syn8016DRAFT_2068	Syn8016DRAFT_2672	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	Ribosomal protein L17; KEGG: pmf:P9303_23271 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; PFAM: Ribosomal protein L17.	0.888
EHA61996.1	rplS	Syn8016DRAFT_2068	Syn8016DRAFT_1404	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.888
EHA61996.1	rplT	Syn8016DRAFT_2068	Syn8016DRAFT_2878	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.896
EHA61996.1	rplU	Syn8016DRAFT_2068	Syn8016DRAFT_1454	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.962
EHA61996.1	rpmA	Syn8016DRAFT_2068	Syn8016DRAFT_1455	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: pme:NATL1_17721 50S ribosomal protein L27; PFAM: Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.880
EHA61996.1	rpmF	Syn8016DRAFT_2068	Syn8016DRAFT_0383	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: pmf:P9303_14571 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.887
EHA61996.1	rpsP	Syn8016DRAFT_2068	Syn8016DRAFT_2459	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: pmt:PMT0350 30S ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.884
rplB	EHA61996.1	Syn8016DRAFT_2692	Syn8016DRAFT_2068	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.	0.887
rplB	rplC	Syn8016DRAFT_2692	Syn8016DRAFT_2695	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.999
rplB	rplI	Syn8016DRAFT_2692	Syn8016DRAFT_2024	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.992
rplB	rplQ	Syn8016DRAFT_2692	Syn8016DRAFT_2672	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L17; KEGG: pmf:P9303_23271 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; PFAM: Ribosomal protein L17.	0.995
rplB	rplS	Syn8016DRAFT_2692	Syn8016DRAFT_1404	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.995
rplB	rplT	Syn8016DRAFT_2692	Syn8016DRAFT_2878	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.995
rplB	rplU	Syn8016DRAFT_2692	Syn8016DRAFT_1454	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.992
rplB	rpmA	Syn8016DRAFT_2692	Syn8016DRAFT_1455	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: pme:NATL1_17721 50S ribosomal protein L27; PFAM: Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.987
rplB	rpmF	Syn8016DRAFT_2692	Syn8016DRAFT_0383	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: pmf:P9303_14571 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.987
rplB	rpsP	Syn8016DRAFT_2692	Syn8016DRAFT_2459	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: pmt:PMT0350 30S ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.988