STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureAPFAM: Urease, alpha/gamma subunit; TIGRFAM: Urease, alpha/gamma subunit; HAMAP: Urease, gamma subunit; KEGG: pmf:P9303_29791 urease subunit gamma; Belongs to the urease gamma subunit family. (100 aa)    
Predicted Functional Partners:
ureB
PFAM: Urease, beta subunit; TIGRFAM: Urease, beta subunit; HAMAP: Urease, beta subunit; KEGG: pmt:PMT2235 urease subunit beta; Belongs to the urease beta subunit family.
 0.999
ureC
PFAM: Amidohydrolase 1; Urease alpha-subunit, N-terminal; TIGRFAM: Urease, alpha subunit; HAMAP: Urease, alpha subunit; KEGG: pmt:PMT2236 urease subunit alpha.
 0.999
ureF
Urease accessory protein ureF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 0.993
ureG
Urease accessory protein ureG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 
 0.990
ureD
Urease accessory protein ureD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 0.988
ureE
Urease accessory protein ureE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
 
 0.973
EHA59278.1
KEGG: pmt:PMT1777 ferredoxin-dependent glutamate synthase; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
      
 0.607
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
   
    0.448
EHA62023.1
PFAM: Domain of unknown function DUF404; Domain of unknown function DUF407; KEGG: pme:NATL1_15711 hypothetical protein.
       0.414
EHA62024.1
PFAM: Domain of unknown function DUF403; KEGG: pmn:PMN2A_0732 hypothetical protein.
       0.414
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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