STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rnzRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (314 aa)    
Predicted Functional Partners:
EHA59265.1
Ribonuclease, Rne/Rng family; SMART: RNA-binding domain, S1; TIGRFAM: Ribonuclease E/G; KEGG: pmt:PMT1789 ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain.
  
 
 0.793
EHA64296.1
Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
     
 0.775
EHA60353.1
SpoIID/LytB domain protein; KEGG: pmt:PMT1425 sporulation protein SpoIID; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal.
       0.583
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
 
 0.549
psbV
Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
       0.533
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
  
 0.475
EHA59427.1
Metal dependent phosphohydrolase; KEGG: pmf:P9303_21871 HD superfamily phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain.
  
     0.433
EHA61807.1
PFAM: Translation initiation factor SUI1; KEGG: pmt:PMT2028 translation initiation factor SUI1.
  
 
   0.427
hisS
PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: pmf:P9303_25401 histidyl-tRNA synthetase.
    
 
 0.421
EHA59357.1
3'-5' exonuclease; KEGG: pmt:PMT1703 putative ribonuclease D; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease.
   
 
 0.413
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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