close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA60394.1KEGG: ach:Achl_3744 hypothetical protein. (124 aa)    
Predicted Functional Partners:
EHA60393.1
Hypothetical protein.
       0.639
EHA60395.1
KEGG: pmt:PMT1463 hypothetical protein.
       0.590
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
     
 0.543
EHA60396.1
KEGG: pma:Pro1602 hypothetical protein.
       0.503
EHA60397.1
KEGG: pmb:A9601_16511 ferredoxin; TIGRFAM: Ferredoxin [2Fe-2S], plant; PFAM: Ferredoxin.
       0.503
EHA60398.1
TIGRFAM: Conserved hypothetical protein CHP02466; KEGG: syf:Synpcc7942_1296 hypothetical protein.
       0.474
EHA61996.1
PFAM: Peptide chain release factor class I/class II; KEGG: pmf:P9303_29401 peptidyl-tRNA hydrolase domain protein.
 
     0.428
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.