STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA60440.1PFAM: Chlorophyll A-B binding protein; KEGG: pme:NATL1_18831 putative high light inducible protein. (50 aa)    
Predicted Functional Partners:
rlmN
Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
     
 0.816
EHA60437.1
PFAM: PBS lyase HEAT-like repeat; HEAT; KEGG: pmt:PMT1501 hypothetical protein.
 
     0.815
ndhO
NAD(P)H-quinone oxidoreductase subunit O; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.772
EHA63064.1
KEGG: pmf:P9303_18171 hypothetical protein.
  
     0.765
EHA63949.1
KEGG: pmj:P9211_05761 hypothetical protein.
  
     0.764
EHA64321.1
KEGG: pmt:PMT1344 hypothetical protein.
  
     0.755
EHA61759.1
HAMAP: Uncharacterised protein family UPF0367; KEGG: pmt:PMT1986 hypothetical protein; Belongs to the UPF0367 family.
  
     0.748
EHA64390.1
PFAM: Protein of unknown function DUF1825; KEGG: pmf:P9303_05601 hypothetical protein.
  
     0.743
EHA63329.1
KEGG: pmt:PMT0769 hypothetical protein.
  
     0.741
EHA60216.1
KEGG: pmf:P9303_21491 hypothetical protein.
  
     0.731
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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