STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA60453.1KEGG: pmt:PMT1523 hypothetical protein. (134 aa)    
Predicted Functional Partners:
rimP
Ribosome maturation factor rimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
       0.642
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
       0.503
EHA60456.1
PFAM: Protein of unknown function DUF448; KEGG: pmt:PMT1527 hypothetical protein.
       0.503
EHA60451.1
KEGG: pmf:P9303_04241 hypothetical protein.
       0.489
EHA60452.1
PFAM: Radical SAM; KEGG: pmf:P9303_04221 putative arylsulfatase regulatory protein.
       0.489
EHA60450.1
ABC-type transporter, periplasmic subunit family 3; KEGG: pmt:PMT1517 ABC transporter solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.
       0.418
EHA60449.1
KEGG: cyt:cce_3732 hypothetical protein.
       0.415
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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