STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA60557.1KEGG: ava:Ava_0829 hypothetical protein. (65 aa)    
Predicted Functional Partners:
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.812
EHA63380.1
KEGG: pmf:P9303_14831 hypothetical protein.
  
     0.749
EHA60548.1
KEGG: pmt:PMT1592 hypothetical protein.
  
     0.748
EHA63254.1
Hypothetical protein; KEGG: syf:Synpcc7942_1997 high light-inducible protein.
  
     0.718
EHA63072.1
KEGG: pmf:P9303_08961 hypothetical protein.
  
     0.688
EHA63691.1
KEGG: syc:syc1602_d hypothetical protein.
  
     0.684
EHA59170.1
PFAM: Membrane protein of unknown function; KEGG: pmt:PMT0070 hypothetical protein.
  
     0.683
EHA60372.1
PFAM: Ferredoxin thioredoxin reductase, alpha chain; KEGG: syn:ssr0330 ferredoxin-thioredoxin reductase, variable chain.
  
     0.679
EHA62061.1
Porin; KEGG: pmf:P9303_26321 porin; Belongs to the OprB family.
  
     0.675
EHA63353.1
KEGG: pmf:P9303_14711 hypothetical protein.
  
     0.672
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.