STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA60562.1PFAM: Domain of unknown function DUF1543; KEGG: ilo:IL1583 hypothetical protein. (175 aa)    
Predicted Functional Partners:
EHA60563.1
TIGRFAM: Cysteine desulfurase, SufS; KEGG: pmf:P9303_03051 putative cysteine desulfurase or selenocysteine lyase; PFAM: Aminotransferase, class V/Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
       0.723
EHA60564.1
SufBD protein; PFAM: SUF system FeS cluster assembly, SufBD; KEGG: pmf:P9303_03041 ABC transporter, membrane component.
       0.723
EHA60565.1
TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: pmt:PMT1605 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
       0.723
mtnA
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
 
     0.591
EHA60566.1
FeS assembly protein SufB; KEGG: pmf:P9303_03021 cysteine desulfurase activator complex subunit SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD.
       0.577
EHA60567.1
Ferredoxin thioredoxin reductase beta chain; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin.
       0.577
EHA60560.1
KEGG: rhi:NGR_b11590 L-fuculose phosphate aldolase; PFAM: Class II aldolase/adducin, N-terminal.
       0.521
EHA61979.1
Trypsin; KEGG: hna:Hneap_2025 trypsin.
  
     0.414
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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