STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA60071.1PFAM: Carbohydrate-selective porin OprB; KEGG: pmf:P9303_19511 hypothetical protein; Belongs to the OprB family. (159 aa)    
Predicted Functional Partners:
EHA60073.1
PFAM: Carbohydrate-selective porin OprB; KEGG: pmf:P9303_19511 hypothetical protein.
 
     0.760
EHA62204.1
KEGG: pmf:P9303_07051 hypothetical protein.
  
     0.592
EHA60072.1
KEGG: pmf:P9303_19511 hypothetical protein.
       0.528
vapC-4
PIN domain protein family protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.494
EHA64141.1
PFAM: Putative ParB-like nuclease; KEGG: pmf:P9303_13631 hypothetical protein.
  
     0.487
EHA64336.1
KEGG: pmf:P9303_06541 ADP-heptose:LPS heptosyltransferase.
  
     0.480
EHA62251.1
KEGG: pmf:P9303_24661 hypothetical protein.
  
     0.480
EHA62496.1
ABC-type transporter, periplasmic subunit family 3; KEGG: pmt:PMT0515 GIC family ligand gated channel; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3.
  
     0.479
EHA63154.1
KEGG: cyn:Cyan7425_3675 protein of unknown function DUF939.
  
     0.478
EHA64046.1
PFAM: Protein of unknown function DUF490; KEGG: pmt:PMT0438 hypothetical protein.
  
     0.478
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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