STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA60082.1KEGG: syf:Synpcc7942_1393 histone deacetylase/AcuC/AphA family protein-like; PFAM: Histone deacetylase superfamily. (282 aa)    
Predicted Functional Partners:
EHA58630.1
KEGG: tmz:Tmz1t_2975 amine oxidase; PFAM: Amine oxidase.
    
 0.976
EHA63430.1
KEGG: pmf:P9303_15251 heat shock protein 90; PFAM: ATPase-like, ATP-binding domain; Heat shock protein Hsp90, C-terminal; SMART: ATPase-like, ATP-binding domain.
    
 0.958
EHA63877.1
Nuclear protein SET; PFAM: SET domain; KEGG: hoh:Hoch_1311 hypothetical protein.
   
 0.911
EHA63672.1
KEGG: dge:Dgeo_0202 uridine kinase.
  
 
 0.906
EHA61930.1
SNF2-related protein; KEGG: pmt:PMT2158 SNF2/helicase domain-containing protein; PFAM: SNF2-related; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal.
    
 0.903
EHA59136.1
Helicase domain protein; KEGG: pmf:P9303_00371 superfamily II DNA/RNA helicases, SNF2 family protein; PFAM: Helicase, C-terminal; SNF2-related; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal.
    
 0.903
EHA64154.1
CbbX protein; TIGRFAM: CbxX/CfqX, monofunctional; PFAM: ATPase, AAA-type, core; KEGG: pmf:P9303_08171 RuBisCo-expression protein CbbX; SMART: ATPase, AAA+ type, core.
    
 0.885
EHA64292.1
KEGG: pmt:PMT1373 AAA ATPase family protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core.
    
 0.885
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
 0.783
EHA60359.1
TIGRFAM: D-3-phosphoglycerate dehydrogenase; KEGG: pmt:PMT1431 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Amino acid-binding ACT.
    
 0.771
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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