STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA60105.1KEGG: pmt:PMT0325 hypothetical protein. (128 aa)    
Predicted Functional Partners:
EHA60104.1
PFAM: Amidohydrolase 3; KEGG: pmt:PMT0326 putative cytosine deaminase.
       0.779
EHA63368.1
Protein of unknown function DUF1239; PFAM: Lipopolysccharide assembly, LptC-related; KEGG: pmf:P9303_14731 hypothetical protein.
  
     0.752
EHA61773.1
PFAM: Domain of unknown function DUF218; KEGG: pmf:P9303_26581 hypothetical protein.
  
     0.747
EHA64118.1
Peptidase M10A and M12B matrixin and adamalysin; KEGG: pmt:PMT0454 hypothetical protein; PFAM: Peptidase M10, metallopeptidase; SMART: Peptidase, metallopeptidase.
  
     0.746
EHA62061.1
Porin; KEGG: pmf:P9303_26321 porin; Belongs to the OprB family.
  
     0.706
EHA60076.1
KEGG: pmt:PMT0352 integral membrane protein, interacts with FtsH; Belongs to the BI1 family.
  
     0.701
EHA62445.1
KEGG: pmt:PMT0149 hypothetical protein.
  
     0.699
EHA61800.1
KEGG: pmf:P9303_26941 hypothetical protein.
  
     0.698
EHA63691.1
KEGG: syc:syc1602_d hypothetical protein.
  
     0.688
EHA62058.1
TIGRFAM: Photosystem II PsbQ, cyanobacteria; KEGG: cyj:Cyan7822_5451 photosystem II protein PsbQ.
  
     0.686
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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