STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA60110.1KEGG: pmm:PMM1307 hypothetical protein. (136 aa)    
Predicted Functional Partners:
EHA60111.1
PFAM: Polypeptide-transport-associated, FtsQ-type; KEGG: pmt:PMT0320 hypothetical protein.
 
     0.855
EHA63612.1
Regulatory protein Crp; PFAM: HTH transcriptional regulator, Crp; KEGG: pmj:P9211_09541 Crp family regulatory protein.
  
     0.768
EHA64026.1
KEGG: pmf:P9303_18671 hypothetical protein.
  
     0.766
EHA63206.1
KEGG: pmt:PMT0859 hypothetical protein.
  
     0.765
EHA64228.1
KEGG: pmj:P9211_04981 hypothetical protein.
  
     0.765
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.764
EHA63052.1
PFAM: Domain of unknown function DUF1400; KEGG: pmt:PMT1147 putative dienelactone hydrolase.
  
     0.762
EHA64321.1
KEGG: pmt:PMT1344 hypothetical protein.
  
     0.744
recO
DNA repair protein recO; Involved in DNA repair and RecF pathway recombination.
  
     0.738
EHA64047.1
PFAM: Protein of unknown function DUF2518; KEGG: pmf:P9303_18421 hypothetical protein.
  
     0.734
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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