STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recODNA repair protein recO; Involved in DNA repair and RecF pathway recombination. (277 aa)    
Predicted Functional Partners:
recR
Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
 0.988
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
    
 0.847
EHA60209.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
    0.817
EHA60211.1
PFAM: Major facilitator superfamily MFS-1; KEGG: pmt:PMT0210 MFS superfamily transporter.
       0.814
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
    0.811
EHA60077.1
PFAM: PhoH-like protein; KEGG: pmf:P9303_19541 PhoH-like phosphate starvation-inducible protein.
  
    0.797
EHA60212.1
PFAM: Glycosyl transferase, group 1; KEGG: pmf:P9303_21451 putative glycosyl transferase, group 1.
 
     0.790
EHA60205.1
KEGG: pmf:P9303_21381 hypothetical protein.
 
     0.785
EHA63052.1
PFAM: Domain of unknown function DUF1400; KEGG: pmt:PMT1147 putative dienelactone hydrolase.
 
     0.774
EHA64321.1
KEGG: pmt:PMT1344 hypothetical protein.
  
     0.768
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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