STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHA60220.1PFAM: Protein of unknown function DUF1823; KEGG: pmt:PMT0202 hypothetical protein. (153 aa)    
Predicted Functional Partners:
EHA62244.1
PFAM: Protein of unknown function DUF3146; KEGG: pmf:P9303_24591 hypothetical protein.
  
     0.762
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.759
rpmF
TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: pmf:P9303_14571 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.741
EHA63004.1
PFAM: Ferredoxin; KEGG: pmt:PMT1184 hypothetical protein.
  
     0.715
EHA61759.1
HAMAP: Uncharacterised protein family UPF0367; KEGG: pmt:PMT1986 hypothetical protein; Belongs to the UPF0367 family.
  
     0.714
EHA63886.1
KEGG: pmt:PMT0527 hypothetical protein.
  
     0.708
EHA60367.1
PFAM: Protein of unknown function DUF1818; KEGG: pmt:PMT1441 hypothetical protein.
  
     0.705
EHA61775.1
Putative Ycf34; KEGG: pmf:P9303_26601 putative Ycf34.
  
     0.704
EHA59355.1
KEGG: pmf:P9303_22651 hypothetical protein.
  
     0.696
EHA60623.1
KEGG: pmf:P9303_02201 hypothetical protein.
  
     0.694
Your Current Organism:
Synechococcus sp. WH 8016
NCBI taxonomy Id: 166318
Other names: S. sp. WH 8016, Synechococcus sp. WH8016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.